mean-variance-iv (runiv.xml)
I-V curves for the same model as is used for mean variance analysis.
Total CPU time 0.2070 seconds; at 16:26:37 Wed 5 Sep 2007
Compartments | Stochastic channels / cpmts | Continuous channels / cpmts | time/ms | timestep/ms | napop:density | CPU Time / s |
1 | 0 / 0 | 201 / 1 | 40.0 | 0.01 | 16 | 0.207 |
Predefined views
16
All files
Model | Preprocessed | Outupt data | Reference data etc |
runiv.xml cell.xml membrane.xml environment.xml recording-iv.xml na1.xml summary.xml view.xml |
out-16-fdata.txt |
out-16-f.dat out-16-f.txt |
mean-variance-iv.jar |
Model
Archive file of the complete model: mean-variance-iv.jarruniv.xml
<PSICSRun lib="." timeStep="0.01ms" runTime="40ms" startPotential="-80mV" morphology="cell" environment="environment" properties="membrane" access="recording-iv" stochThreshold="0"> <StructureDiscretization baseElementSize="3um"/> <RunSet vary="napop:density" values="[16]per_um2" filepattern="out-$.txt"> <CommandSet vary="vstep:to" values="[-60, -40, -30, -20, -10, 0, 10, 20, 30, 40]mV"/> </RunSet> <About> I-V curves for the same model as is used for mean variance analysis. </About> <ViewConfig> <LineGraph width="500" height="400"> <XAxis min="0" max="250" label="time / ms"/> <YAxis min="-80" max="60" label="current / nA"/> <LineSet file="out-16-f.txt" color="green"/> <View id="16" xmin="0." xmax="40." ymin="-500." ymax="20."/> </LineGraph> </ViewConfig> </PSICSRun>
cell.xml
<CellMorphology id="cell"> <Point id="p0" x="0" y="0" z="0" r="1."/> </CellMorphology>
membrane.xml
<CellProperties id="membrane" cytoplasmResistivity="100ohm_cm" membraneCapacitance="1uF_per_cm2"> <ChannelPopulation id="napop" channel="na1" density="12per_um2"/> </CellProperties>
environment.xml
<CellEnvironment id="environment"> <Ion id="Na" name="Sodium" reversalPotential="80mV"/> <Ion id="K" name="Potassium" reversalPotential="-80mV"/> </CellEnvironment>
recording-iv.xml
<Access id="recording-iv" saveInterval="0.01ms"> <VoltageClamp at="p0" lineColor="red" hold="-80.0mV"> <VoltagePulse id="vstep" start="5ms" to="0mV" duration="20ms"/> </VoltageClamp> </Access>
na1.xml
<KSChannel id="na1" gSingle="30pS" permeantIon="Na"> <ClosedState id="c1"/> <OpenState id="o1"/> <ClosedState id="c2"/> <VHalfTransition from="c1" to="o1" vHalf = "-35mV" z="4.5e" gamma="0.8" tau="0.55ms" tauMin="0.1ms"/> <VHalfTransition from="o1" to="c2" vHalf = "-70mV" z="1.1e" gamma="0.90" tau="12.0ms" tauMin="1.5ms"/> </KSChannel>